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    LOC102083551 hepatocyte nuclear factor 4-beta [ Columba livia (rock pigeon) ]

    Gene ID: 102083551, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC102083551
    Gene description
    hepatocyte nuclear factor 4-beta
    Locus tag
    A306_01728
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Columba livia
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
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    Genomic context

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    See LOC102083551 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 13 NC_088614.1 (8160979..8230886, complement)
    102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973333.1 (7870321..7909060, complement)

    Chromosome 13 - NC_088614.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102098769 Neighboring gene zinc finger DHHC-type palmitoyltransferase 7 Neighboring gene cysteine rich secretory protein LCCL domain containing 2 Neighboring gene ubiquitin specific peptidase 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 4-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bColLiv1.pat.W.v2

    Genomic

    1. NC_088614.1 Reference bColLiv1.pat.W.v2

      Range
      8160979..8230886 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_065028865.1 → XP_064884937.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    2. XM_065028860.1 → XP_064884932.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    3. XM_065028862.1 → XP_064884934.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    4. XM_065028870.1 → XP_064884942.1  hepatocyte nuclear factor 4-beta isoform X2

      UniProtKB/TrEMBL
      A0A2I0M0B9

    5. XM_065028868.1 → XP_064884940.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    6. XM_065028864.1 → XP_064884936.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    7. XM_065028863.1 → XP_064884935.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    8. XM_065028861.1 → XP_064884933.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    9. XM_065028856.1 → XP_064884928.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    10. XM_065028855.1 → XP_064884927.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    11. XM_065028854.1 → XP_064884926.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    12. XM_021290644.2 → XP_021146319.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7
      Conserved Domains (2) summary
      cd06931
      Location:161 → 382
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:70 → 145
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    13. XM_021290643.2 → XP_021146318.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7
      Conserved Domains (2) summary
      cd06931
      Location:161 → 382
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:70 → 145
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    14. XM_065028867.1 → XP_064884939.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    15. XM_065028866.1 → XP_064884938.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    16. XM_065028859.1 → XP_064884931.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    17. XM_065028857.1 → XP_064884929.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    18. XM_065028853.1 → XP_064884925.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    19. XM_065028858.1 → XP_064884930.1  hepatocyte nuclear factor 4-beta isoform X1

      UniProtKB/TrEMBL
      A0A2I0M0B7

    20. XM_065028869.1 → XP_064884941.1  hepatocyte nuclear factor 4-beta isoform X2

      UniProtKB/TrEMBL
      A0A2I0M0B9

    21. XM_065028871.1 → XP_064884943.1  hepatocyte nuclear factor 4-beta isoform X3

    Nucleotide Protein
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