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    vps5 retromer complex subunit Vps5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539552, updated on 18-Sep-2024

    Summary

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    Official Symbol
    vps5
    Official Full Name
    retromer complex subunit Vps5
    Primary source
    PomBase:SPCPJ732.01
    Locus tag
    SPOM_SPCPJ732.01
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See vps5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (702597..704818)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene mitochondrial 54S ribosomal protein uL2m Neighboring gene RNA cap binding protein cbc3 Neighboring gene protein mug123 Neighboring gene TATA-binding protein-associated factor TAF6 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene xylulose kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting nexin homologues are targets of phosphatidylinositol 3-phosphate in sporulation of Schizosaccharomyces pombe. Koga T, et al. Genes Cells, 2004 Jun. PMID 15189449
    2. Vacuolar protein sorting receptor in Schizosaccharomyces pombe. Iwaki T, et al. Microbiology (Reading), 2006 May. PMID 16622069
    3. Comprehensive proteomics analysis reveals new substrates and regulators of the fission yeast clp1/cdc14 phosphatase. Chen JS, et al. Mol Cell Proteomics, 2013 May. PMID 23297348, Free PMC Article
    4. Promoter nucleosome dynamics regulated by signalling through the CTD code. Materne P, et al. Elife, 2015 Jun 22. PMID 26098123, Free PMC Article
    5. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in ascospore-type prospore membrane formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in intracellular protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein retention in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm HDA PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endosome IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    is_active_in prospore membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of retromer complex IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retromer complex subunit Vps5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      702597..704818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022920.3 → NP_587929.1  retromer complex subunit Vps5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_587929.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9C0U7
      Conserved Domains (3) summary
      cd06861
      Location:202 → 314
      PX_Vps5p; The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p
      cd07627
      Location:361 → 576
      BAR_Vps5p; The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p
      COG5391
      Location:59 → 576
      COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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