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    LOC117680609 E3 ubiquitin-protein ligase TRIM71 [ Magallana gigas (Pacific oyster) ]

    Gene ID: 117680609, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC117680609
    Gene description
    E3 ubiquitin-protein ligase TRIM71
    See related
    EnsemblRapid:ENSBDJG00000017503
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Magallana gigas
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Magallana
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    Genomic context

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    See LOC117680609 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current xbMagGiga1.1 (GCF_963853765.1) 9 NC_088861.1 (46392725..46628445)
    102 previous assembly cgigas_uk_roslin_v1 (GCF_902806645.1) Unplaced Scaffold NW_022994918.1 (77283..327563)

    Chromosome 9 - NC_088861.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117686496 Neighboring gene uncharacterized LOC117686505 Neighboring gene transfer RNA threonine (anticodon GGU) Neighboring gene uncharacterized LOC105333296 Neighboring gene transfer RNA threonine (anticodon GGU) Neighboring gene midasin Neighboring gene uncharacterized LOC105343551 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene THAP domain-containing protein 11 Neighboring gene uncharacterized LOC105348435 Neighboring gene uncharacterized LOC117690475 Neighboring gene uncharacterized LOC117685860 Neighboring gene uncharacterized LOC105342034 Neighboring gene probable E3 ubiquitin-protein ligase MID2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein monoubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM71; uncharacterized protein LOC117680609

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963853765.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference xbMagGiga1.1

    Genomic

    1. NC_088861.1 Reference xbMagGiga1.1

      Range
      46392725..46628445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066072585.1 → XP_065928657.1  uncharacterized protein LOC117680609 isoform X6

    2. XM_066072584.1 → XP_065928656.1  E3 ubiquitin-protein ligase TRIM71 isoform X5

      UniProtKB/TrEMBL
      A0A8W8MQQ4

    3. XM_066072583.1 → XP_065928655.1  E3 ubiquitin-protein ligase TRIM71 isoform X5

      UniProtKB/TrEMBL
      A0A8W8MQQ4

    4. XM_066072578.1 → XP_065928650.1  E3 ubiquitin-protein ligase TRIM71 isoform X3

      UniProtKB/TrEMBL
      A0A8W8MJT8

    5. XM_066072577.1 → XP_065928649.1  E3 ubiquitin-protein ligase TRIM71 isoform X3

      UniProtKB/TrEMBL
      A0A8W8MJT8
      Related
      ENSBDJP00000022971.1, ENSBDJT00000025739.1

    6. XM_066072579.1 → XP_065928651.1  E3 ubiquitin-protein ligase TRIM71 isoform X3

      UniProtKB/TrEMBL
      A0A8W8MJT8

    7. XM_066072580.1 → XP_065928652.1  E3 ubiquitin-protein ligase TRIM71 isoform X3

      UniProtKB/TrEMBL
      A0A8W8MJT8

    8. XM_066072576.1 → XP_065928648.1  E3 ubiquitin-protein ligase TRIM71 isoform X3

      UniProtKB/TrEMBL
      A0A8W8MJT8

    9. XM_066072582.1 → XP_065928654.1  E3 ubiquitin-protein ligase TRIM71 isoform X4

      UniProtKB/TrEMBL
      A0A8W8MQQ4

    10. XM_066072581.1 → XP_065928653.1  E3 ubiquitin-protein ligase TRIM71 isoform X4

      UniProtKB/TrEMBL
      A0A8W8MQQ4

    11. XM_066072573.1 → XP_065928645.1  E3 ubiquitin-protein ligase TRIM71 isoform X1

    12. XM_066072574.1 → XP_065928646.1  E3 ubiquitin-protein ligase TRIM71 isoform X2

    13. XM_066072575.1 → XP_065928647.1  E3 ubiquitin-protein ligase TRIM71 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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