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    smpx small muscle protein X-linked [ Haplochromis burtoni (Burton's mouthbrooder) ]

    Gene ID: 102304592, updated on 2-Oct-2024

    Summary

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    Gene symbol
    smpx
    Gene description
    small muscle protein X-linked
    See related
    Ensembl:ENSHBUG00000013727
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Haplochromis burtoni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
    Orthologs
    human zebrafish all
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    Genomic context

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    See smpx in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582516.1 (138084..161536)
    101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179541.1 (1313667..1329579, complement)

    NW_024582516.1Genomic Context describing neighboring genes Neighboring gene phosphate regulating endopeptidase homolog, X-linked Neighboring gene membrane-bound transcription factor peptidase, site 2 Neighboring gene connector enhancer of kinase suppressor of Ras 2a Neighboring gene toll-like receptor 13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kelch-like protein 34; small muscle protein X-linked

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433715.1 → NP_001420644.1  small muscle protein X-linked

      Status: VALIDATED

      Source sequence(s)
      JAGKPV010000155

    RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NCSU_Asbu1 Primary Assembly

    Genomic

    1. NW_024582516.1 Reference NCSU_Asbu1 Primary Assembly

      Range
      138084..161536
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042224893.1 → XP_042080827.1  kelch-like protein 34

      Conserved Domains (3) summary
      PHA03098
      Location:26 → 579
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:318 → 372
      Kelch; KELCH repeat [structural motif]
      cl38908
      Location:3 → 137
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    2. XM_042224891.1 → XP_042080825.1  kelch-like protein 34

      Conserved Domains (3) summary
      PHA03098
      Location:26 → 579
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:318 → 372
      Kelch; KELCH repeat [structural motif]
      cl38908
      Location:3 → 137
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    3. XM_005932162.2 → XP_005932224.2  kelch-like protein 34

      Conserved Domains (3) summary
      PHA03098
      Location:26 → 579
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:318 → 372
      Kelch; KELCH repeat [structural motif]
      cl38908
      Location:3 → 137
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    4. XM_042224892.1 → XP_042080826.1  kelch-like protein 34

      Conserved Domains (3) summary
      PHA03098
      Location:26 → 579
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:318 → 372
      Kelch; KELCH repeat [structural motif]
      cl38908
      Location:3 → 137
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    5. XM_005932163.2 → XP_005932225.2  kelch-like protein 34

      Conserved Domains (3) summary
      PHA03098
      Location:26 → 579
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:318 → 372
      Kelch; KELCH repeat [structural motif]
      cl38908
      Location:3 → 137
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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