elf transcription factor protein [Ciona intestinalis (vase tunicate)] - Gene

Summary

Gene symbol: elf
Gene description: transcription factor protein
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Ciona intestinalis
Lineage: Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as: Ci-Elf
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Genomic context

Location:: chromosome: 14

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
104	current	KH (GCF_000224145.3)	14	NC_020179.2 (2847013..2851714, complement)

Chromosome 14 - NC_020179.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_020179.2 Chromosome 14 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transcription factor protein

Names: Ets transcription factor Elf

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001100131.2 → NP_001093601.2 transcription factor protein isoform 1

Status: VALIDATED

Source sequence(s)

EAAA01001262

UniProtKB/TrEMBL

A0A1W5BIE4, A4PIG5, F7AJU0
NM_001434492.1 → NP_001421421.1 transcription factor protein isoform 2

Status: VALIDATED

Source sequence(s)

EAAA01001262

UniProtKB/TrEMBL

A4PIG5

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

NC_020179.2 Reference KH Primary Assembly

Range

2847013..2851714 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_018814687.2 → XP_018670232.1 transcription factor protein isoform X1
XM_018814688.2 → XP_018670233.1 transcription factor protein isoform X2

UniProtKB/TrEMBL

A4PIG5