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    REEP6 receptor accessory protein 6 [ Sus scrofa (pig) ]

    Gene ID: 100626712, updated on 21-Dec-2024

    Summary

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    Official Symbol
    REEP6provided by VGNC
    Official Full Name
    receptor accessory protein 6provided by VGNC
    Primary source
    VGNC:VGNC:100850
    See related
    Ensembl:ENSSSCG00000026387
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in liver (RPKM 31.5), mixtures (RPKM 12.4) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See REEP6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 2 NC_010444.4 (76983431..76989017, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 2 NC_010444.3 (77876316..77878381, complement)

    Chromosome 2 - NC_010444.4Genomic Context describing neighboring genes Neighboring gene polo like kinase 5 (inactive) Neighboring gene ADAMTS like 5 Neighboring gene proprotein convertase subtilisin/kexin type 4 Neighboring gene chromosome 2 C19orf25 homolog Neighboring gene uncharacterized LOC110259375 Neighboring gene APC regulator of WNT signaling pathway 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    receptor accessory protein 6; receptor expression-enhancing protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001435396.1 → NP_001422325.1  receptor accessory protein 6

      Status: VALIDATED

      Source sequence(s)
      AEMK02000012

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

      Range
      76983431..76989017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021084238.1 → XP_020939897.1  receptor expression-enhancing protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A8D1VN24
      Conserved Domains (1) summary
      pfam03134
      Location:66 → 143
      TB2_DP1_HVA22; TB2/DP1, HVA22 family

    2. XM_021084239.1 → XP_020939898.1  receptor expression-enhancing protein 6 isoform X3

      UniProtKB/TrEMBL
      A0A4X1VUH1, A0A8D1VN24, A0A8W4F9R1
      Related
      ENSSSCP00000075572.1, ENSSSCT00000100292.1
      Conserved Domains (1) summary
      pfam03134
      Location:66 → 143
      TB2_DP1_HVA22; TB2/DP1, HVA22 family

    3. XM_021084237.1 → XP_020939896.1  receptor expression-enhancing protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A8D0ZT46, A0A8D1J727
      Conserved Domains (2) summary
      pfam03134
      Location:66 → 143
      TB2_DP1_HVA22; TB2/DP1, HVA22 family
      cl28033
      Location:233 → 498
      Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

    RNA

    1. XR_002341705.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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