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    CTNNBIP1 catenin beta interacting protein 1 [ Sus scrofa (pig) ]

    Gene ID: 100627651, updated on 21-Dec-2024

    Summary

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    Official Symbol
    CTNNBIP1provided by VGNC
    Official Full Name
    catenin beta interacting protein 1provided by VGNC
    Primary source
    VGNC:VGNC:87066
    See related
    Ensembl:ENSSSCG00000036868
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 11.9), ovary (RPKM 5.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CTNNBIP1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (70184935..70241560, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003541169.1 (9707..10963)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene transmembrane protein 201 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta Neighboring gene calsyntenin 1 Neighboring gene leucine zipper and CTNNBIP1 domain containing Neighboring gene nicotinamide nucleotide adenylyltransferase 1 Neighboring gene retinol binding protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-catenin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of beta-catenin destruction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-catenin-interacting protein 1; catenin beta interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001435401.1 → NP_001422330.1  catenin beta interacting protein 1

      Status: VALIDATED

      Source sequence(s)
      AEMK02000044

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      70184935..70241560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021095298.1 → XP_020950957.1  beta-catenin-interacting protein 1 isoform X2

    2. XM_021095297.1 → XP_020950956.1  beta-catenin-interacting protein 1 isoform X1

    3. XM_021095300.1 → XP_020950959.1  beta-catenin-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A287ADI4, A0A8D0T7A6
      Related
      ENSSSCP00000041866.1, ENSSSCT00000059616.3
      Conserved Domains (1) summary
      pfam06384
      Location:1 → 79
      ICAT; Beta-catenin-interacting protein ICAT

    4. XM_021095301.1 → XP_020950960.1  beta-catenin-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A287ADI4, A0A8D0T7A6
      Conserved Domains (1) summary
      pfam06384
      Location:1 → 79
      ICAT; Beta-catenin-interacting protein ICAT

    5. XM_021095303.1 → XP_020950962.1  beta-catenin-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A287ADI4, A0A8D0T7A6
      Conserved Domains (1) summary
      pfam06384
      Location:1 → 79
      ICAT; Beta-catenin-interacting protein ICAT

    6. XM_021095302.1 → XP_020950961.1  beta-catenin-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A287ADI4, A0A8D0T7A6
      Conserved Domains (1) summary
      pfam06384
      Location:1 → 79
      ICAT; Beta-catenin-interacting protein ICAT

    RNA

    1. XR_002344887.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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