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    CMC2 C-X9-C motif containing 2 [ Sus scrofa (pig) ]

    Gene ID: 110261262, updated on 21-Dec-2024

    Summary

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    Official Symbol
    CMC2provided by VGNC
    Official Full Name
    C-X9-C motif containing 2provided by VGNC
    Primary source
    VGNC:VGNC:110409
    See related
    Ensembl:ENSSSCG00000032060
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in psoas major muscle (RPKM 12.6), longissimus dorsi muscle (RPKM 11.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See CMC2 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (7254937..7278714)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene ATM interactor Neighboring gene centromere protein N Neighboring gene uncharacterized LOC102166063 Neighboring gene uncharacterized LOC110261264 Neighboring gene chromodomain Y like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_010448.4 Chromosome 6 Reference Sscrofa11.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C-X9-C motif containing 2; COX assembly mitochondrial protein 2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001435425.1 → NP_001422354.1  C-X9-C motif containing 2

      Status: VALIDATED

      Source sequence(s)
      AEMK02000039

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      7254937..7278714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021097072.1 → XP_020952731.1  COX assembly mitochondrial protein 2 homolog isoform X2

    2. XM_021097071.1 → XP_020952730.1  COX assembly mitochondrial protein 2 homolog isoform X1

      Conserved Domains (1) summary
      pfam08583
      Location:92 → 135
      Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like

    3. XM_021097073.1 → XP_020952732.1  COX assembly mitochondrial protein 2 homolog isoform X3

      UniProtKB/TrEMBL
      A0A286ZZC7, A0A4X1SZQ7, A0A8D1JRI0
      Conserved Domains (1) summary
      pfam08583
      Location:1 → 70
      Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like

    4. XM_021097076.1 → XP_020952735.1  COX assembly mitochondrial protein 2 homolog isoform X3

      UniProtKB/TrEMBL
      A0A286ZZC7, A0A4X1SZQ7, A0A8D1JRI0
      Related
      ENSSSCP00000036993.1, ENSSSCT00000055491.3
      Conserved Domains (1) summary
      pfam08583
      Location:1 → 70
      Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like

    5. XM_021097075.1 → XP_020952734.1  COX assembly mitochondrial protein 2 homolog isoform X3

      UniProtKB/TrEMBL
      A0A286ZZC7, A0A4X1SZQ7, A0A8D1JRI0
      Conserved Domains (1) summary
      pfam08583
      Location:1 → 70
      Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
    Nucleotide Protein
    Heading Accession and Version

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