U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Odaph odontogenesis associated phosphoprotein [ Mus musculus (house mouse) ]

    Gene ID: 381651, updated on 27-Nov-2024

    Summary

    Official Symbol
    Odaphprovided by MGI
    Official Full Name
    odontogenesis associated phosphoproteinprovided by MGI
    Primary source
    MGI:MGI:2685891
    See related
    Ensembl:ENSMUSG00000096035 AllianceGenome:MGI:2685891
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1045; Gm1045-a; Gm1045-b
    Summary
    Predicted to be involved in positive regulation of enamel mineralization. Human ortholog(s) of this gene implicated in amelogenesis imperfecta hypomaturation type 2A4. Orthologous to human ODAPH (odontogenesis associated phosphoprotein). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Odaph in Genome Data Viewer
    Location:
    5 E2; 5 45.68 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (92135332..92143176)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (91987473..91995317)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36357 Neighboring gene STARR-seq mESC enhancer starr_13621 Neighboring gene STARR-seq mESC enhancer starr_13622 Neighboring gene STARR-seq mESC enhancer starr_13623 Neighboring gene ring finger and CHY zinc finger domain containing 1 Neighboring gene THAP domain containing 6 Neighboring gene STARR-seq mESC enhancer starr_13624 Neighboring gene cyclin dependent kinase like 2 Neighboring gene predicted gene, 46915 Neighboring gene STARR-positive B cell enhancer mm9_chr5:92471665-92471966 Neighboring gene predicted gene, 22728 Neighboring gene G3BP stress granule assembly factor 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (5) 
    • Targeted (1)  1 citation

    General protein information

    Preferred Names
    odontogenesis associated phosphoprotein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177577.1NP_001171048.1  odontogenesis associated phosphoprotein precursor

      Status: VALIDATED

      Source sequence(s)
      AC165433
      Consensus CDS
      CCDS57356.1
      UniProtKB/TrEMBL
      A0A075DD83, J3QNT8
      Related
      ENSMUSP00000136951.2, ENSMUST00000178614.3
      Conserved Domains (1) summary
      pfam15848
      Location:24105
      DUF4721; Domain of unknown function (DUF4721)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      92135332..92143176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)