U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC106316002 ethylene receptor 2 [ Brassica oleracea (wild cabbage) ]

    Gene ID: 106316002, updated on 30-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC106316002
    Gene description
    ethylene receptor 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica oleracea
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    Also known as
    BO-ETR2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC106316002 in Genome Data Viewer
    Location:
    chromosome: C1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current BOL (GCF_000695525.1) C1 NC_027748.1 (31187087..31190249, complement)

    Chromosome C1 - NC_027748.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106297691 Neighboring gene uncharacterized LOC106337448 Neighboring gene AP2-like ethylene-responsive transcription factor TOE2 Neighboring gene uncharacterized LOC106337462

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_027748.1 Chromosome C1 Reference BOL Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ethylene binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ethylene receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphorelay sensor kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to ethylene IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ethylene receptor 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Brassica oleracea Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BOL Primary Assembly

    Genomic

    1. NC_027748.1 Reference BOL Primary Assembly

      Range
      31187087..31190249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013753960.1 → XP_013609414.1  ethylene receptor 2

      UniProtKB/TrEMBL
      A0A0D3ABB9, Q8W3J7
      Conserved Domains (3) summary
      smart00065
      Location:186 → 346
      GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
      smart00388
      Location:372 → 432
      HisKA; His Kinase A (phosphoacceptor) domain
      cd00156
      Location:656 → 773
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

    2. XM_013753894.1 → XP_013609348.1  ethylene receptor 2

      UniProtKB/TrEMBL
      A0A0D3ABB9, Q8W3J7
      Conserved Domains (3) summary
      smart00065
      Location:186 → 346
      GAF; Domain present in phytochromes and cGMP-specific phosphodiesterases
      smart00388
      Location:372 → 432
      HisKA; His Kinase A (phosphoacceptor) domain
      cd00156
      Location:656 → 773
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases