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    LOC4334077 stem-specific protein TSJT1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334077, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334077
    Gene description
    stem-specific protein TSJT1
    Locus tag
    OSNPB_030744600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334077 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31443442..31446316, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30560802..30563699, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ATP-sulfurylase 3, chloroplastic Neighboring gene uncharacterized LOC4334076 Neighboring gene protein SPIRRIG Neighboring gene uncharacterized LOC4334078

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    stem-specific protein TSJT1
    Names
    Os03g0744600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31443442..31446316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777134.3 → XP_015632620.1  stem-specific protein TSJT1

      UniProtKB/TrEMBL
      A0A5S6R6Y8, A3AML2, Q0DNN6, Q7XXR0
      Conserved Domains (1) summary
      cd01910
      Location:2 → 228
      Wali7; This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine ...
    Nucleotide Protein
    Heading Accession and Version

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