U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC4345952 uncharacterized LOC4345952 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345952, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4345952
    Gene description
    uncharacterized LOC4345952
    Locus tag
    OSNPB_080500800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1345_D02.6
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4345952 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24872434..24876711)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24726948..24731222)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g29760, chloroplastic Neighboring gene heat shock protein 81-1 Neighboring gene phosphoribosylglycinamide formyltransferase, chloroplastic Neighboring gene wall-associated receptor kinase 3-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC4345952
    Names
    Os08g0500800
    zinc metalloproteinase-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24872434..24876711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794194.3 → XP_015649680.1  uncharacterized protein LOC4345952

      UniProtKB/TrEMBL
      B8BC55, B9G1N2, Q0J4P1, Q6ZK12
      Conserved Domains (3) summary
      cd10463
      Location:566 → 666
      PUB_WLM; PNGase/UBA or UBX (PUB) domain of the Wss1p-like metalloprotease (WLM) family
      pfam08325
      Location:139 → 324
      WLM; WLM domain
      NF033845
      Location:347 → 548
      MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials