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    LOC105374338 uncharacterized LOC105374338 [ Homo sapiens (human) ]

    Gene ID: 105374338, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC105374338
    Gene description
    uncharacterized LOC105374338
    See related
    Ensembl:ENSG00000283183
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in skin (RPKM 5.1), brain (RPKM 2.8) and 1 other tissue See more
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    Genomic context

    See LOC105374338 in Genome Data Viewer
    Location:
    4p16.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (577168..584866)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (576512..584211)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (570957..578655)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:492231-493096 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:493097-493960 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group) Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21129 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:568739-569432 Neighboring gene transmembrane protein 271 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:581897-583096 Neighboring gene uncharacterized LOC124900162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:604697-605456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:617058-618048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:619038-620027 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:620028-621016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:628544-629044 Neighboring gene phosphodiesterase 6B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:644363-645316 Neighboring gene PDE6B antisense RNA 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_148199.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC116565, AK123125
      Related
      ENST00000637674.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      577168..584866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      576512..584211
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)