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    LOC401557 uncharacterized LOC401557 [ Homo sapiens (human) ]

    Gene ID: 401557, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC401557
    Gene description
    uncharacterized LOC401557
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC401557 in Genome Data Viewer
    Location:
    9q34.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (135181609..135187306)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (147405225..147410922)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (138073455..138079152)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137977814-137978674 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137978675-137979535 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137980170-137980974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137980975-137981778 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137983799-137983956 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137989975-137990476 Neighboring gene olfactomedin 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137997243-137997767 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137997768-137998293 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137998819-137999344 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138000081-138000642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138000643-138001202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138007797-138008496 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138017982-138018648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138018649-138019315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138025969-138026770 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138028163-138028906 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138028907-138029652 Neighboring gene uncharacterized LOC102723948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138057350-138057850 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138062007-138062508 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:138064860-138065360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138066123-138066624 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138078411-138079170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138079171-138079930 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:138089981-138090638 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:138090639-138091296 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138110575-138111150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138111151-138111726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138111727-138112301 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138114640-138115217 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138115797-138116374 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138116375-138116952 Neighboring gene uncharacterized LOC107987138 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138142531-138143102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138152625-138153124 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138174821-138175368 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138176843-138177509 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138189455-138190251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138234136-138234848 Neighboring gene long intergenic non-protein coding RNA 2907

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046107.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK127261, AL390778

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      135181609..135187306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      147405225..147410922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials