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    Ecym_7460 TRAMP complex RNA-binding subunit [ Eremothecium cymbalariae DBVPG#7215 ]

    Gene ID: 11469802, updated on 6-Dec-2024

    Summary

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    Gene symbol
    Ecym_7460
    Gene description
    TRAMP complex RNA-binding subunit
    Locus tag
    Ecym_7460
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Eremothecium cymbalariae DBVPG#7215 (strain: DBVPG#7215)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
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    Genomic context

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    See Ecym_7460 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Sequence:
    Chromosome: 7; NC_016455.1 (943453..944625, complement)

    Chromosome 7 - NC_016455.1Genomic Context describing neighboring genes Neighboring gene proliferating cell nuclear antigen Neighboring gene uncharacterized protein Neighboring gene threonine--tRNA ligase THS1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_016455.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome evolution in the eremothecium clade of the Saccharomyces complex revealed by comparative genomics. Wendland J, et al. G3 (Bethesda), 2011 Dec. PMID 22384365, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in polyadenylation-dependent RNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TRAMP complex RNA-binding subunit
    XP_003648096.1
    • similar to Ashbya gossypii ACL040C

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_016455.1 Reference assembly

      Range
      943453..944625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003648048.1 → XP_003648096.1  TRAMP complex RNA-binding subunit [Eremothecium cymbalariae DBVPG#7215]

      See identical proteins and their annotated locations for XP_003648096.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      G8JWR4
      Conserved Domains (2) summary
      COG5082
      Location:8 → 197
      AIR1; Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
      pfam13901
      Location:69 → 133
      zf-RING_9; Putative zinc-RING and/or ribbon
    Nucleotide Protein
    Heading Accession and Version

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