rdh16.L retinol dehydrogenase 16 gene 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rdh16.L
Official Full Name: retinol dehydrogenase 16 gene 1 L homeolog
Primary source: Xenbase:XB-GENE-1007899
Locus tag: XELAEV_18013407mg
See related: EnsemblRapid:ENSXLAG00005006675 AllianceGenome:Xenbase:XB-GENE-1007899
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rdh16; rdh16.1
Summary: Predicted to enable oxidoreductase activity. Is expressed in musculoskeletal system; pharyngeal arch; and visual system. Orthologous to human RDH16 (retinol dehydrogenase 16). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

Location:: chromosome: 2L

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2L	NC_054373.1 (145943877..145955456, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2L	NC_030726.1 (140006993..140018572, complement)

Chromosome 2L - NC_054373.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: retinol dehydrogenase 16 L homeolog; retinol dehydrogenase 16 gene 1 L homeolog

Names: retinol dehydrogenase 16 (all-trans) L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089887.2 → NP_001083356.1 retinol dehydrogenase 16 gene 1 L homeolog

See identical proteins and their annotated locations for NP_001083356.1

Status: PROVISIONAL

Source sequence(s)

BC060497

UniProtKB/TrEMBL

A0A974HZ59, Q6PA10

Conserved Domains (1) summary

cd09805
Location:30 → 306

type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

145943877..145955456 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041580920.1 → XP_041436854.1 retinol dehydrogenase 16 L homeolog isoform X1

UniProtKB/TrEMBL

A0A974HZ59, Q6PA10

Related

ENSXLAP00005019747.1, ENSXLAT00005020110.1

Conserved Domains (1) summary

cd09805
Location:30 → 306

type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs