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    CG13708 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38582, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13708provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0035577
    Locus tag
    Dmel_CG13708
    See related
    AllianceGenome:FB:FBgn0035577
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CT33170; Dmel\CG13708
    Summary
    Orthologous to human LRRC49 (leucine rich repeat containing 49). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13708 in Genome Data Viewer
    Location:
    64C1-64C1; 3-13 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (4829092..4833591, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (4829092..4833591, complement)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Dynein heavy chain 64C Neighboring gene Leucyl-tRNA synthetase, mitochondrial Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNAi screening of Drosophila (Sophophora) melanogaster S2 cells for ricin sensitivity and resistance. Pawar V, et al. J Biomol Screen, 2011 Apr. PMID 21364088, Free PMC Article
    2. Identification of Drosophila Mutants Affecting Defense to an Entomopathogenic Fungus. Lu HL, et al. Sci Rep, 2015 Jul 23. PMID 26202798, Free PMC Article
    3. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article
    4. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
    5. A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. Neely GG, et al. Cell, 2010 Apr 2. PMID 20371351, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13708-PA
    CG13708-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      4829092..4833591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001274504.1 → NP_001261433.1  uncharacterized protein Dmel_CG13708, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261433.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZ81
      Conserved Domains (5) summary
      cd00116
      Location:428 → 572
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam14580
      Location:1059 → 1153
      LRR_9; Leucine-rich repeat
      sd00033
      Location:449 → 471
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:564 → 604
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:516 → 574
      LRR_8; Leucine rich repeat

    2. NM_139676.2 → NP_647933.1  uncharacterized protein Dmel_CG13708, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647933.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VZ81
      Related
      FBpp0073214
      Conserved Domains (5) summary
      cd00116
      Location:428 → 572
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      pfam14580
      Location:1059 → 1153
      LRR_9; Leucine-rich repeat
      sd00033
      Location:449 → 471
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:564 → 604
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:516 → 574
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VZ81 Q9VZ81

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