U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    gag protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 853005, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    gag protein
    Primary source
    SGD:S000007346
    Locus tag
    YGR109W-A
    See related
    AllianceGenome:SGD:S000007346; FungiDB:YGR109W-A; VEuPathDB:YGR109W-A
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables DNA binding activity. Involved in retrotransposition. Located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: VII
    Exon count:
    1
    Sequence:
    Chromosome: VII; NC_001139.9 (707610..708482)

    Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene B-type cyclin CLB6 Neighboring gene tRNA-Cys Neighboring gene gag-pol fusion protein Neighboring gene carboxylic ester hydrolase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001139.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Ty3 capsid mutations reveal early and late functions of the amino-terminal domain. Larsen LS, et al. J Virol, 2007 Jul. PMID 17442718, Free PMC Article
    2. A single zinc finger optimizes the DNA interactions of the nucleocapsid protein of the yeast retrotransposon Ty3. Chaurasiya KR, et al. Nucleic Acids Res, 2012 Jan. PMID 21917850, Free PMC Article
    3. TY3 GAG3 protein forms ordered particles in Escherichia coli. Larsen LS, et al. Virology, 2008 Jan 20. PMID 17964628, Free PMC Article
    4. Ty3 nucleocapsid controls localization of particle assembly. Larsen LS, et al. J Virol, 2008 Mar. PMID 18094177, Free PMC Article
    5. The TY3 Gag3 spacer controls intracellular condensation and uncoating. Clemens K, et al. J Virol, 2011 Apr. PMID 21270167, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrotransposition IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in viral translational frameshifting IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in retrotransposon nucleocapsid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    gag protein
    NP_058162.3
    • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001139.9 Reference assembly

      Range
      707610..708482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001184380.3 → NP_058162.3  TPA: gag protein [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_058162.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VUP2, Q07096, Q12173, Q99219, Q9P311
      Conserved Domains (1) summary
      cl29674
      Location:70 → 157
      Retrotrans_gag; Retrotransposon gag protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q12173.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools