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    WHAMMP2 WHAMM pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 440253, updated on 10-Dec-2024

    Summary

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    Official Symbol
    WHAMMP2provided by HGNC
    Official Full Name
    WHAMM pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:32360
    See related
    AllianceGenome:HGNC:32360
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    WHAMML2; WHDC1L2
    Expression
    Broad expression in bone marrow (RPKM 3.7), fat (RPKM 2.2) and 25 other tissues See more
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    Genomic context

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    See WHAMMP2 in Genome Data Viewer
    Location:
    15q13.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (28737583..28758362)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (26514304..26535081)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (28982729..29003508)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene HERC2 pseudogene 9 Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene Neighboring gene uncharacterized LOC107984746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28947514-28948014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28948015-28948515 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28950433-28951142 Neighboring gene golgin A8 family member M Neighboring gene RNA, 7SL, cytoplasmic 719, pseudogene Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:28989516-28990108 Neighboring gene zinc finger FYVE-type containing 9 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:29029486-29029986 Neighboring gene Dexi homolog (mouse) pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Large genomic duplicons map to sites of instability in the Prader-Willi/Angelman syndrome chromosome region (15q11-q13). Christian SL, et al. Hum Mol Genet, 1999 Jun. PMID 10332034
    2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2
    • WAS protein homolog associated with actin, golgi membranes and microtubules-like 2 (pseudogene)
    • WAS protein homology region 2 domain containing 1-like 2 (pseudogene)

    Clone Names

    • FLJ33935

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026589.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC055876

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      28737583..28758362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_011332701.1 Reference GRCh38.p14 PATCHES

      Range
      899588..920365
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      1013374..1034151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      26514304..26535081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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