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    SF3B1 splicing factor 3b subunit 1 [ Gallus gallus (chicken) ]

    Gene ID: 424056, updated on 17-Aug-2024

    Summary

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    Symbol
    SF3B1provided by CGNC
    Full Name
    splicing factor 3b subunit 1provided by CGNC
    Primary source
    CGNC:6082
    See related
    Ensembl:ENSGALG00010010748
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SF3B1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (9787719..9808094, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (9713061..9733437, complement)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124418402 Neighboring gene post-GPI attachment to proteins 1 Neighboring gene ankyrin repeat domain 44 Neighboring gene microRNA 1603 Neighboring gene coenzyme Q10B Neighboring gene heat shock protein family D (Hsp60) member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 3B subunit 1
    Names
    splicing factor 3b, subunit 1, 155kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      9787719..9808094 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_421912.8 → XP_421912.3  splicing factor 3B subunit 1 isoform X1

      See identical proteins and their annotated locations for XP_421912.3

      UniProtKB/TrEMBL
      E1C2C3
      Related
      ENSGALP00010014477.1, ENSGALT00010025688.1
      Conserved Domains (4) summary
      smart01104
      Location:233 → 379
      CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
      COG5181
      Location:443 → 1301
      HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
      sd00044
      Location:847 → 871
      HEAT; HEAT repeat [structural motif]
      pfam08920
      Location:329 → 439
      SF3b1; Splicing factor 3B subunit 1

    2. XM_015289491.4 → XP_015144977.1  splicing factor 3B subunit 1 isoform X2

      Conserved Domains (4) summary
      smart01104
      Location:88 → 234
      CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
      COG5181
      Location:298 → 1156
      HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
      sd00044
      Location:702 → 726
      HEAT; HEAT repeat [structural motif]
      pfam08920
      Location:184 → 294
      SF3b1; Splicing factor 3B subunit 1

    3. XM_040703597.2 → XP_040559531.1  splicing factor 3B subunit 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y683
      Related
      ENSGALP00010014463.1, ENSGALT00010025661.1

    RNA

    1. XR_001467449.4 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9713061..9733437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040676064.2 → XP_040531998.1  splicing factor 3B subunit 1 isoform X1

      UniProtKB/TrEMBL
      E1C2C3
      Conserved Domains (4) summary
      smart01104
      Location:233 → 379
      CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
      COG5181
      Location:443 → 1301
      HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
      sd00044
      Location:847 → 871
      HEAT; HEAT repeat [structural motif]
      pfam08920
      Location:329 → 439
      SF3b1; Splicing factor 3B subunit 1

    2. XM_040676065.2 → XP_040531999.1  splicing factor 3B subunit 1 isoform X2

      Conserved Domains (4) summary
      smart01104
      Location:88 → 234
      CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
      COG5181
      Location:298 → 1156
      HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
      sd00044
      Location:702 → 726
      HEAT; HEAT repeat [structural motif]
      pfam08920
      Location:184 → 294
      SF3b1; Splicing factor 3B subunit 1

    3. XM_040676066.2 → XP_040532000.1  splicing factor 3B subunit 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y683

    RNA

    1. XR_005851670.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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