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    LINC02698 long intergenic non-protein coding RNA 2698 [ Homo sapiens (human) ]

    Gene ID: 105369512, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02698provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2698provided by HGNC
    Primary source
    HGNC:HGNC:54212
    See related
    AllianceGenome:HGNC:54212
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02698 in Genome Data Viewer
    Location:
    11q23.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (115659353..115901574)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (115672515..115914679)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5545 Neighboring gene ribosomal protein L12 pseudogene 46 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504287-115504832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504833-115505378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115516252-115516892 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115526889-115527390 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115535875-115536376 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115536377-115536876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115540906-115541406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115541407-115541907 Neighboring gene uncharacterized LOC101928985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115611894-115612436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115612437-115612979 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:115627599-115628798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115629978-115630512 Neighboring gene uncharacterized LOC107987165 Neighboring gene long intergenic non-protein coding RNA 900 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:115688718-115689307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5546 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5549 Neighboring gene long intergenic non-protein coding RNA 2703 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:115812040-115813239 Neighboring gene ribosomal protein L15 pseudogene 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      115659353..115901574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001748394.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      115672515..115914679
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007081590.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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