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    LOC113107834 probable glutamate receptor [ Carassius auratus (goldfish) ]

    Gene ID: 113107834, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC113107834
    Gene description
    probable glutamate receptor
    See related
    Ensembl:ENSCARG00000021184
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carassius auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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    Genomic context

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    See LOC113107834 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM336829v1 (GCF_003368295.1) 8 NC_039250.1 (27673366..27682322)

    Chromosome 8 - NC_039250.1Genomic Context describing neighboring genes Neighboring gene peroxisome biogenesis factor 10-like Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2-like Neighboring gene dipeptidyl peptidase 9-like Neighboring gene KN motif and ankyrin repeat domains 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039250.1 Chromosome 8 Reference ASM336829v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables AMPA glutamate receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modulation of chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic transmission, glutamatergic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AMPA glutamate receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendritic spine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glutamate receptor
    Names
    kainate receptor alpha subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM336829v1 Primary Assembly

    Genomic

    1. NC_039250.1 Reference ASM336829v1 Primary Assembly

      Range
      27673366..27682322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026270603.1 → XP_026126388.1  probable glutamate receptor

      UniProtKB/TrEMBL
      A0A6P6PYY1, Q90279
      Conserved Domains (1) summary
      cd13685
      Location:22 → 375
      PBP2_iGluR_non_NMDA_like; The ligand-binding domain of non-NMDA (N-methyl-D-aspartate) type ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily

    2. XM_026270604.1 → XP_026126389.1  probable glutamate receptor

      UniProtKB/TrEMBL
      A0A6P6PYY1, Q90279
      Related
      ENSCARP00000049155.1, ENSCART00000051352.1
      Conserved Domains (1) summary
      cd13685
      Location:22 → 375
      PBP2_iGluR_non_NMDA_like; The ligand-binding domain of non-NMDA (N-methyl-D-aspartate) type ionotropic glutamate receptors, a member of the type 2 periplasmic-binding fold protein superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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