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    BC080696 cDNA sequence BC080696 [ Mus musculus (house mouse) ]

    Gene ID: 665521, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BC080696provided by MGI
    Official Full Name
    cDNA sequence BC080696provided by MGI
    Primary source
    MGI:MGI:3770624
    See related
    Ensembl:ENSMUSG00000107315 AllianceGenome:MGI:3770624
    Gene type
    unknown
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more

    Genomic context

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    See BC080696 in Genome Data Viewer
    Location:
    5 E3; 5 47.29 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (94581990..94584799, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (94434131..94436940, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene PRAME like 39, pseudogene Neighboring gene PRAME like 40 Neighboring gene PRAME like 52, pseudogene Neighboring gene STARR-seq mESC enhancer starr_13671 Neighboring gene PRAME like 41 Neighboring gene PRAME like 42 Neighboring gene PRAME like 44 Neighboring gene PRAME like 43

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      94581990..94584799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_168623.5 RNA Sequence

      Related
      ENSMUST00000202858.2
    Nucleotide Protein Strain
    Heading Accession and Version

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