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    Taf1 TATA-box binding protein associated factor 1 [ Mesocricetus auratus (golden hamster) ]

    Gene ID: 101838159, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Taf1
    Gene description
    TATA-box binding protein associated factor 1
    See related
    EnsemblRapid:ENSMAUG00000018664
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mesocricetus auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
    Also known as
    CCG1; p250; TAFII250; TAFII-250; TAF(II)250
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See Taf1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429188.1 (48050681..48121012)
    102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801714.1 (7310399..7377242)

    NW_024429188.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta 1 binding protein 2 Neighboring gene 40S ribosomal protein S28-like Neighboring gene O-linked N-acetylglucosamine (GlcNAc) transferase Neighboring gene proline-rich protein 36-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The CCG1/TAFII250 gene is mutated in thermosensitive G1 mutants of the BHK21 cell line derived from golden hamster. Hayashida T, et al. Gene, 1994 Apr 20. PMID 8163200
    2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 1
    Names
    Cell cycle gene 1 protein
    TBP-associated factor 250 kDa
    Transcription initiation factor TFIID 250 kDa subunit
    NP_001268498.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001281569.1 → NP_001268498.1  transcription initiation factor TFIID subunit 1

      See identical proteins and their annotated locations for NP_001268498.1

      Status: PROVISIONAL

      Source sequence(s)
      D26114
      UniProtKB/Swiss-Prot
      Q60544
      UniProtKB/TrEMBL
      A0A1U7Q244
      Related
      ENSMAUP00000047884.1, ENSMAUT00000041478.1
      Conserved Domains (5) summary
      cd05511
      Location:1502 → 1614
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      pfam09247
      Location:27 → 80
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:560 → 1022
      DUF3591; Protein of unknown function (DUF3591)
      pfam14797
      Location:1714 → 1805
      SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
      pfam15288
      Location:1256 → 1291
      zf-CCHC_6; Zinc knuckle

    RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Maur_2.0 Primary Assembly

    Genomic

    1. NW_024429188.1 Reference BCM_Maur_2.0 Primary Assembly

      Range
      48050681..48121012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q60544.1 GenPept UniProtKB/Swiss-Prot:Q60544

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