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    SF3B3 splicing factor 3b subunit 3 [ Gallus gallus (chicken) ]

    Gene ID: 415680, updated on 17-Aug-2024

    Summary

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    Symbol
    SF3B3provided by CGNC
    Full Name
    splicing factor 3b subunit 3provided by CGNC
    Primary source
    CGNC:1817
    See related
    Ensembl:ENSGALG00010023190
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SF3B3 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (1743655..1772045, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (1915909..1944273, complement)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene interleukin 34 Neighboring gene small nucleolar RNA SNORD111 Neighboring gene component of oligomeric golgi complex 4 Neighboring gene fucokinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U2 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor 3B subunit 3
    Names
    splicing factor 3b, subunit 3, 130kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      1743655..1772045 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004944119.5 → XP_004944176.1  splicing factor 3B subunit 3

      See identical proteins and their annotated locations for XP_004944176.1

      UniProtKB/TrEMBL
      A0A1D6UPS9, A0A8V0ZZD5
      Related
      ENSGALP00010034263.1, ENSGALT00010056521.1
      Conserved Domains (2) summary
      pfam03178
      Location:863 → 1182
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:76 → 592
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    2. XM_001232347.6 → XP_001232348.2  splicing factor 3B subunit 3

      See identical proteins and their annotated locations for XP_001232348.2

      UniProtKB/TrEMBL
      A0A1D6UPS9, A0A8V0ZZD5
      Related
      ENSGALP00010034267.1, ENSGALT00010056525.1
      Conserved Domains (2) summary
      pfam03178
      Location:863 → 1182
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:76 → 592
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    3. XM_015279214.4 → XP_015134700.1  splicing factor 3B subunit 3

      UniProtKB/TrEMBL
      A0A1D6UPS9, A0A8V0ZZD5
      Conserved Domains (2) summary
      pfam03178
      Location:863 → 1182
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:76 → 592
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1915909..1944273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040680980.2 → XP_040536914.1  splicing factor 3B subunit 3

      UniProtKB/TrEMBL
      A0A1D6UPS9, A0A8V0ZZD5
      Conserved Domains (2) summary
      pfam03178
      Location:863 → 1182
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:76 → 592
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    2. XM_040680978.2 → XP_040536912.1  splicing factor 3B subunit 3

      UniProtKB/TrEMBL
      A0A1D6UPS9, A0A8V0ZZD5
      Conserved Domains (2) summary
      pfam03178
      Location:863 → 1182
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:76 → 592
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    3. XM_040680979.2 → XP_040536913.1  splicing factor 3B subunit 3

      UniProtKB/TrEMBL
      A0A1D6UPS9, A0A8V0ZZD5
      Conserved Domains (2) summary
      pfam03178
      Location:863 → 1182
      CPSF_A; CPSF A subunit region
      pfam10433
      Location:76 → 592
      MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039257.1: Suppressed sequence

      Description
      NM_001039257.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Nucleotide Protein Strain
    Heading Accession and Version

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