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    OXCT1 3-oxoacid CoA-transferase 1 [ Gallus gallus (chicken) ]

    Gene ID: 427190, updated on 17-Aug-2024

    Summary

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    Symbol
    OXCT1provided by CGNC
    Full Name
    3-oxoacid CoA-transferase 1provided by CGNC
    Primary source
    CGNC:53012
    See related
    Ensembl:ENSGALG00010012511
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See OXCT1 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (13708311..13794895, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (13708311..13794895, complement)

    Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene complement C6 Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 3 Neighboring gene C5orf51 homolog Neighboring gene F-box protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables succinyl-CoA:3-oxo-acid CoA-transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ketone body catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
    NP_001006578.2
    XP_040511456.1
    XP_046761298.1
    XP_046761299.1
    XP_046790995.1
    XP_046790996.1
    XP_046790997.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006578.3 → NP_001006578.2  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

      See identical proteins and their annotated locations for NP_001006578.2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000089
      UniProtKB/TrEMBL
      Q5F3M8
      Related
      ENSGALP00010017428.1, ENSGALT00010029976.1
      Conserved Domains (3) summary
      COG1788
      Location:41 → 274
      AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]
      COG4670
      Location:48 → 514
      YdiF; Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism]
      cl00339
      Location:299 → 507
      SugarP_isomerase; SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      13708311..13794895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040655522.2 → XP_040511456.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

      Conserved Domains (1) summary
      cl00339
      Location:189 → 397
      SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

    2. XM_046905342.1 → XP_046761298.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

    3. XM_046905343.1 → XP_046761299.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      13708311..13794895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046935039.1 → XP_046790995.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

    2. XM_046935040.1 → XP_046790996.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

    3. XM_046935041.1 → XP_046790997.1  succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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