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    NTN4 netrin 4 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100410845, updated on 8-Mar-2024

    Summary

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    Gene symbol
    NTN4
    Gene description
    netrin 4
    See related
    Ensembl:ENSCJAG00000002709
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See NTN4 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (95233784..95359120, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (96323384..96451061, complement)

    Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene methionyl aminopeptidase 2 Neighboring gene ubiquitin specific peptidase 44 Neighboring gene uncharacterized LOC128928598 Neighboring gene phosphoglycerate mutase 1-like Neighboring gene protein LLP homolog Neighboring gene U6 spliceosomal RNA Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in basement membrane assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in substrate adhesion-dependent cell spreading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of laminin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    netrin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071450.1 Reference mCalJa1.2.pat.X

      Range
      95233784..95359120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035257342.2 → XP_035113233.1  netrin-4 isoform X2

      UniProtKB/TrEMBL
      F6UDK1, U3CUZ3
      Conserved Domains (5) summary
      smart00180
      Location:358 → 409
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00055
      Location:224 → 283
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd03578
      Location:479 → 589
      NTR_netrin-4_like; NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural ...
      pfam00053
      Location:295 → 355
      Laminin_EGF; Laminin EGF domain
      pfam00055
      Location:1 → 223
      Laminin_N; Laminin N-terminal (Domain VI)

    2. XM_002752876.6 → XP_002752922.1  netrin-4 isoform X1

      See identical proteins and their annotated locations for XP_002752922.1

      UniProtKB/TrEMBL
      U3CUZ3, U3CXF1
      Related
      ENSCJAP00000004944.2
      Conserved Domains (4) summary
      cd00055
      Location:258 → 317
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd03578
      Location:513 → 623
      NTR_netrin-4_like; NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural ...
      pfam00053
      Location:392 → 446
      Laminin_EGF; Laminin EGF domain
      pfam00055
      Location:40 → 257
      Laminin_N; Laminin N-terminal (Domain VI)

    3. XM_009004394.4 → XP_009002642.1  netrin-4 isoform X2

      See identical proteins and their annotated locations for XP_009002642.1

      UniProtKB/TrEMBL
      F6UDK1, U3CUZ3
      Related
      ENSCJAP00000004948.1
      Conserved Domains (5) summary
      smart00180
      Location:358 → 409
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00055
      Location:224 → 283
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd03578
      Location:479 → 589
      NTR_netrin-4_like; NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural ...
      pfam00053
      Location:295 → 355
      Laminin_EGF; Laminin EGF domain
      pfam00055
      Location:1 → 223
      Laminin_N; Laminin N-terminal (Domain VI)
    Nucleotide Protein
    Heading Accession and Version

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