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    LOC100128076 protein tyrosine phosphatase receptor type H pseudogene [ Homo sapiens (human) ]

    Gene ID: 100128076, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100128076
    Gene description
    protein tyrosine phosphatase receptor type H pseudogene
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100128076 in Genome Data Viewer
    Location:
    9q22.31
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (92132834..92138629)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (104299316..104305121)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (94895116..94900911)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene serine palmitoyltransferase long chain base subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28589 Neighboring gene MT-ND3 pseudogene 23 Neighboring gene MT-ND4L pseudogene 7 Neighboring gene MT-ND4 pseudogene 15 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:94896185-94896816 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:94902296-94902875 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:94903455-94904034 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:94904035-94904613 Neighboring gene small nucleolar RNA U13 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:94909356-94910555 Neighboring gene long intergenic non-protein coding RNA 475 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20030 Neighboring gene BEN domain containing 3 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Cloning of hOST-PTP: the only example of a protein-tyrosine-phosphatase the function of which has been lost between rodent and human. Cousin W, et al. Biochem Biophys Res Commun, 2004 Aug 13. PMID 15358244
    2. A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage. Andersen JN, et al. FASEB J, 2004 Jan. PMID 14718383
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • protein tyrosine phosphatase pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015444.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AY786555

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      92132834..92138629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      104299316..104305121
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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