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    Tbrg1 transforming growth factor beta regulator 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300521, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tbrg1provided by RGD
    Official Full Name
    transforming growth factor beta regulator 1provided by RGD
    Primary source
    RGD:1305123
    See related
    EnsemblRapid:ENSRNOG00000023850 AllianceGenome:RGD:1305123
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in several processes, including DNA replication; protein localization to nucleoplasm; and protein stabilization. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human TBRG1 (transforming growth factor beta regulator 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 379.3), Testes (RPKM 256.4) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Tbrg1 in Genome Data Viewer
    Location:
    8q22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (45544018..45551676, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (37355274..37362933, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (40114792..40122450, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene sperm autoantigenic protein 17 Neighboring gene sialic acid acetylesterase Neighboring gene pannexin 3 Neighboring gene nudix hydrolase 5, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Clone Names

    • MGC95119

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in DNA replication ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in negative regulation of cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein localization to nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein stabilization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of regulation of cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    transforming growth factor beta regulator 1
    Names
    transforming growth factor beta regulated gene 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009344.2NP_001009344.2  transforming growth factor beta regulator 1

      See identical proteins and their annotated locations for NP_001009344.2

      Status: VALIDATED

      Source sequence(s)
      BC087142, BI285514, CO572447
      UniProtKB/Swiss-Prot
      Q5PQK8
      UniProtKB/TrEMBL
      A6KRK2
      Related
      ENSRNOP00000037323.4, ENSRNOT00000039729.6
      Conserved Domains (2) summary
      pfam05964
      Location:183233
      FYRN; F/Y-rich N-terminus
      pfam05965
      Location:239320
      FYRC; F/Y rich C-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      45544018..45551676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)