Lysmd1 LysM domain containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Lysmd1provided by RGD
Official Full Name: LysM domain containing 1provided by RGD
Primary source: RGD:1561865
See related: EnsemblRapid:ENSRNOG00000071857 AllianceGenome:RGD:1561865
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be located in nucleoplasm. Orthologous to human LYSMD1 (LysM domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Brain (RPKM 67.5), Thymus (RPKM 52.6) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 2q34

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	2	NC_086020.1 (185394145..185403475)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	2	NC_051337.1 (182704921..182714466)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	2	NC_005101.4 (196304492..196312520)

Chromosome 2 - NC_086020.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

UniSTS:234754 (e-PCR)
- UniSTS:234754

RH134839 (e-PCR)
- UniSTS:218117

AI454737 (e-PCR)
- UniSTS:246327

RH132449 (e-PCR)
- UniSTS:215732

BE097455 (e-PCR)
- UniSTS:244669

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: lysM and putative peptidoglycan-binding domain-containing protein 1

Names: LysM, putative peptidoglycan-binding, domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001024302.2 → NP_001019473.1 lysM and putative peptidoglycan-binding domain-containing protein 1

See identical proteins and their annotated locations for NP_001019473.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000002

UniProtKB/Swiss-Prot

Q562B1, Q5HZA4

UniProtKB/TrEMBL

A6K2V1

Conserved Domains (1) summary

cd00118
Location:42 → 84

LysM; Lysin Motif is a small domain involved in binding peptidoglycan