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    LOC100246682 phosphopantothenoylcysteine decarboxylase [ Vitis vinifera (wine grape) ]

    Gene ID: 100246682, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100246682
    Gene description
    phosphopantothenoylcysteine decarboxylase
    Locus tag
    VIT_00007555001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100246682 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 17 NC_081821.1 (12595985..12603917)
    102 previous assembly 12X (GCF_000003745.3) 17 NC_012023.3 (12198790..12206700)

    Chromosome 17 - NC_081821.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109124322 Neighboring gene uncharacterized LOC132252770 Neighboring gene E3 ubiquitin-protein ligase AIRP2 Neighboring gene GDSL esterase/lipase At3g48460 Neighboring gene uncharacterized LOC104882266

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphopantothenoylcysteine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in coenzyme A biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of phosphopantothenoylcysteine decarboxylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphopantothenoylcysteine decarboxylase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081821.1 Reference ASM3070453v1 Primary Assembly

      Range
      12595985..12603917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002276793.4 → XP_002276829.1  phosphopantothenoylcysteine decarboxylase isoform X1

      See identical proteins and their annotated locations for XP_002276829.1

      Conserved Domains (1) summary
      PLN02496
      Location:6 → 214
      PLN02496; probable phosphopantothenoylcysteine decarboxylase

    2. XM_010664745.3 → XP_010663047.1  phosphopantothenoylcysteine decarboxylase isoform X1

      See identical proteins and their annotated locations for XP_010663047.1

      Conserved Domains (1) summary
      PLN02496
      Location:6 → 214
      PLN02496; probable phosphopantothenoylcysteine decarboxylase

    3. XM_010664749.3 → XP_010663051.1  phosphopantothenoylcysteine decarboxylase isoform X2

      See identical proteins and their annotated locations for XP_010663051.1

      UniProtKB/TrEMBL
      A0A438FHB2
      Conserved Domains (1) summary
      PLN02496
      Location:5 → 213
      PLN02496; probable phosphopantothenoylcysteine decarboxylase

    4. XM_002276865.5 → XP_002276901.1  phosphopantothenoylcysteine decarboxylase isoform X2

      See identical proteins and their annotated locations for XP_002276901.1

      UniProtKB/TrEMBL
      A0A438FHB2
      Conserved Domains (1) summary
      PLN02496
      Location:5 → 213
      PLN02496; probable phosphopantothenoylcysteine decarboxylase

    5. XM_010664747.3 → XP_010663049.1  phosphopantothenoylcysteine decarboxylase isoform X2

      See identical proteins and their annotated locations for XP_010663049.1

      UniProtKB/TrEMBL
      A0A438FHB2
      Conserved Domains (1) summary
      PLN02496
      Location:5 → 213
      PLN02496; probable phosphopantothenoylcysteine decarboxylase

    6. XM_010664746.3 → XP_010663048.1  phosphopantothenoylcysteine decarboxylase isoform X2

      See identical proteins and their annotated locations for XP_010663048.1

      UniProtKB/TrEMBL
      A0A438FHB2
      Conserved Domains (1) summary
      PLN02496
      Location:5 → 213
      PLN02496; probable phosphopantothenoylcysteine decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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