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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001282750.2 → NP_001269679.1 SUN domain-containing ossification factor isoform 3 precursor
See identical proteins and their annotated locations for NP_001269679.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' and 3' coding region, and initiates translation at a downstream AUG, compared to variant 2. The encoded protein (isoform 3) is shorter than isoform 2.
- Source sequence(s)
-
AJ250075, AK302509, AL035291, DB093941
- Consensus CDS
-
CCDS65727.1
- UniProtKB/TrEMBL
-
B4DYM4
- Related
- ENSP00000476704.1, ENST00000610051.5
- Conserved Domains (2) summary
-
- pfam03938
Location:565 → 639
- OmpH; Outer membrane protein (OmpH-like)
- pfam07738
Location:286 → 415
- Sad1_UNC; Sad1 / UNC-like C-terminal
-
NM_001282751.2 → NP_001269680.1 SUN domain-containing ossification factor isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) contains multiple differences in the 5' UTR and coding region, compared to variant 2. This variant represents translation initiation at a downstream AUG compared to variant 2; the 5'-most initiation codon, as used in variant 2, is associated with a truncated ORF that would render the transcript a candidate for nonsense-mediated decay (NMD). Leaky scanning may allow translation initiation at the downstream AUG.
- Source sequence(s)
-
AJ250075, AL035291, BC144487, DB093941
- Consensus CDS
-
CCDS72984.1
- UniProtKB/TrEMBL
-
A0A087WV04
- Related
- ENSP00000479061.1, ENST00000616058.4
- Conserved Domains (1) summary
-
- pfam04899
Location:373 → 442
- MbeD_MobD; MbeD/MobD like
-
NM_014283.5 → NP_055098.1 SUN domain-containing ossification factor isoform 1 precursor
See identical proteins and their annotated locations for NP_055098.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR and 5' coding region and initiates translation at a downstream AUG, compared to variant 2. The encoded protein (isoform 1) is shorter than isoform 2.
- Source sequence(s)
-
AJ250075, AL035291, BC137125, DB093941
- Consensus CDS
-
CCDS1303.1
- UniProtKB/Swiss-Prot
- B2RNU4, Q9BQB9, Q9BXQ2, Q9UBS9, Q9UL04
- UniProtKB/TrEMBL
-
B4DZJ3
- Related
- ENSP00000263688.3, ENST00000263688.4
- Conserved Domains (3) summary
-
- pfam04899
Location:936 → 1005
- MbeD_MobD; MbeD/MobD like
- pfam03938
Location:936 → 991
- OmpH; Outer membrane protein (OmpH-like)
- pfam07738
Location:323 → 452
- Sad1_UNC; Sad1 / UNC-like C-terminal
-
NM_016227.4 → NP_057311.3 SUN domain-containing ossification factor isoform 2
See identical proteins and their annotated locations for NP_057311.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) represents the longest transcript and encodes the longest protein (isoform 1).
- Source sequence(s)
-
AF097535, AJ250075, AL035291, Z94054
- Consensus CDS
-
CCDS65726.1
- Related
- ENSP00000356696.4, ENST00000367723.8
- Conserved Domains (2) summary
-
- pfam04899
Location:1087 → 1156
- MbeD_MobD; MbeD/MobD like
- pfam07738
Location:481 → 603
- Sad1_UNC; Sad1 / UNC-like C-terminal
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
172532349..172611833
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006711374.3 → XP_006711437.1 SUN domain-containing ossification factor isoform X1
- UniProtKB/TrEMBL
-
B4DZJ3
- Conserved Domains (3) summary
-
- pfam04899
Location:929 → 998
- MbeD_MobD; MbeD/MobD like
- pfam03938
Location:929 → 984
- OmpH; Outer membrane protein (OmpH-like)
- pfam07738
Location:323 → 445
- Sad1_UNC; Sad1 / UNC-like C-terminal
-
XM_006711375.3 → XP_006711438.1 SUN domain-containing ossification factor isoform X2
- UniProtKB/TrEMBL
-
B4DZJ3
- Conserved Domains (2) summary
-
- pfam04899
Location:899 → 968
- MbeD_MobD; MbeD/MobD like
- pfam07738
Location:286 → 415
- Sad1_UNC; Sad1 / UNC-like C-terminal
-
XM_006711376.2 → XP_006711439.1 SUN domain-containing ossification factor isoform X3
- UniProtKB/TrEMBL
-
B4DZJ3
- Conserved Domains (3) summary
-
- pfam05483
Location:796 → 970
- SCP-1; Synaptonemal complex protein 1 (SCP-1)
- pfam07738
Location:286 → 408
- Sad1_UNC; Sad1 / UNC-like C-terminal
- pfam03938
Location:892 → 947
- OmpH; Outer membrane protein (OmpH-like)
RNA
-
XR_007060764.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
171889056..171968934
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054336963.1 → XP_054192938.1 SUN domain-containing ossification factor isoform X1
- UniProtKB/TrEMBL
-
B4DZJ3
-
XM_054336964.1 → XP_054192939.1 SUN domain-containing ossification factor isoform X2
- UniProtKB/TrEMBL
-
B4DZJ3
-
XM_054336965.1 → XP_054192940.1 SUN domain-containing ossification factor isoform X3
- UniProtKB/TrEMBL
-
B4DZJ3
RNA
-
XR_008486064.1 RNA Sequence