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    DTYMK deoxythymidylate kinase [ Homo sapiens (human) ]

    Gene ID: 1841, updated on 9-Dec-2024

    Summary

    Official Symbol
    DTYMKprovided by HGNC
    Official Full Name
    deoxythymidylate kinaseprovided by HGNC
    Primary source
    HGNC:HGNC:3061
    See related
    Ensembl:ENSG00000168393 MIM:188345; AllianceGenome:HGNC:3061
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CDC8; TMPK; TYMK; CONPM; PP3731
    Summary
    Enables ATP binding activity and thymidylate kinase activity. Involved in dTDP biosynthetic process and thymidine biosynthetic process. Located in mitochondrion. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in bone marrow (RPKM 9.1), lymph node (RPKM 8.0) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See DTYMK in Genome Data Viewer
    Location:
    2q37.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (241675747..241686815, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (242179081..242190147, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (242615162..242626230, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242529014-242529910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242529911-242530805 Neighboring gene RNA, 5S ribosomal pseudogene 122 Neighboring gene THAP domain containing 4 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_58008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242548955-242549456 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242549457-242549957 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242550174-242550694 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242554967-242555773 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17429 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12547 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12548 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12549 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:242576729-242577656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242578056-242578589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242584167-242584667 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242584739-242585240 Neighboring gene autophagy related 4B cysteine peptidase Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242596891-242597666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242600039-242600540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242600541-242601040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242604899-242605504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242607599-242608100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242608101-242608600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12553 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:242626177-242626439 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:242640872-242641704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242641943-242642572 Neighboring gene inhibitor of growth family member 5 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12557 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12558 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17431 Neighboring gene D-2-hydroxyglutarate dehydrogenase Neighboring gene MPRA-validated peak4107 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:242703699-242704312

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Associated conditions

    Description Tests
    Neurodegeneration, childhood-onset, with progressive microcephaly
    MedGen: C5676972 OMIM: 619847 GeneReviews: Not available
    not available

    EBI GWAS Catalog

    Description
    Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
    EBI GWAS Catalog

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ44192, MGC198617

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables ATP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables nucleoside diphosphate kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables thymidylate kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables thymidylate kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to growth factor stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in dTDP biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in dTDP biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in dTTP biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in dTTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in dUDP biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in myoblast differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nucleoside monophosphate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to cadmium ion IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to estrogen IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in thymidine biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in thymidine biosynthetic process TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion HTP PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    thymidylate kinase
    Names
    dTMP kinase
    deoxythymidylate kinase (thymidylate kinase)
    NP_001158503.1
    NP_001307831.1
    NP_001307832.1
    NP_001307833.1
    NP_001307834.1
    NP_036277.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001165031.2NP_001158503.1  thymidylate kinase isoform 2

      See identical proteins and their annotated locations for NP_001158503.1

      Status: VALIDATED

      Source sequence(s)
      AA446104, AK223434, BC171902
      UniProtKB/TrEMBL
      Q53F55
      Conserved Domains (2) summary
      PLN02924
      Location:2187
      PLN02924; thymidylate kinase
      pfam02223
      Location:11167
      Thymidylate_kin; Thymidylate kinase
    2. NM_001320902.2NP_001307831.1  thymidylate kinase isoform 3

      Status: VALIDATED

      Source sequence(s)
      AA446104, AK223434, CN356277, CX166352
      UniProtKB/TrEMBL
      H7C312
      Conserved Domains (2) summary
      PLN02924
      Location:2168
      PLN02924; thymidylate kinase
      pfam02223
      Location:11148
      Thymidylate_kin; Thymidylate kinase
    3. NM_001320903.2NP_001307832.1  thymidylate kinase isoform 4

      Status: VALIDATED

      Source sequence(s)
      AA446104, AK223434, BC171902, CX166352
      UniProtKB/Swiss-Prot
      P23919
      UniProtKB/TrEMBL
      Q53F55
      Conserved Domains (1) summary
      cl17190
      Location:278
      NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...
    4. NM_001320904.2NP_001307833.1  thymidylate kinase isoform 5

      Status: VALIDATED

      Source sequence(s)
      AA427388, AA446104, AK223434, CX166352
      UniProtKB/TrEMBL
      Q53F55
      Related
      ENSP00000408939.1, ENST00000445261.5
      Conserved Domains (2) summary
      PLN02924
      Location:2192
      PLN02924; thymidylate kinase
      pfam02223
      Location:11172
      Thymidylate_kin; Thymidylate kinase
    5. NM_001320905.2NP_001307834.1  thymidylate kinase isoform 6

      Status: VALIDATED

      Source sequence(s)
      AA446104, AC133528, AK223434, BF951595, CX166352
      UniProtKB/TrEMBL
      Q53F55
      Conserved Domains (3) summary
      PLN02924
      Location:2250
      PLN02924; thymidylate kinase
      pfam02223
      Location:11230
      Thymidylate_kin; Thymidylate kinase
      pfam13900
      Location:84119
      GVQW; Putative domain of unknown function
    6. NM_012145.4NP_036277.2  thymidylate kinase isoform 1

      See identical proteins and their annotated locations for NP_036277.2

      Status: VALIDATED

      Source sequence(s)
      AA446104, BC147006
      Consensus CDS
      CCDS2552.1
      UniProtKB/Swiss-Prot
      B7ZW70, P23919, Q6FGX1, Q9BUX4
      UniProtKB/TrEMBL
      Q53F55, Q6FGU2
      Related
      ENSP00000304802.2, ENST00000305784.7
      Conserved Domains (1) summary
      PLN02924
      Location:2211
      PLN02924; thymidylate kinase

    RNA

    1. NR_033255.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AW273041, BC171903, BQ021114
      Related
      ENST00000400770.6
    2. NR_135492.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (8) is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AA446104, AK223434, CN356277, CX166352

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      241675747..241686815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      242179081..242190147 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)