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    CG15160 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35109, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG15160provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032688
    Locus tag
    Dmel_CG15160
    See related
    AllianceGenome:FB:FBgn0032688
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG15160
    Summary
    Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be located in chromatin. Is expressed in organism. Orthologous to human RPRD2 (regulation of nuclear pre-mRNA domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG15160 in Genome Data Viewer
    Location:
    36F6-36F6; 2-53 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (18590891..18595429)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (18590891..18595429)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44903 Neighboring gene uncharacterized protein Neighboring gene Phosphodiesterase 11 Neighboring gene absent MD neurons and olfactory sensilla Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple enhancers contribute to spatial but not temporal complexity in the expression of the proneural gene, amos. Holohan EE, et al. BMC Dev Biol, 2006 Nov 9. PMID 17094800, Free PMC Article
    2. Rough eye is a gain-of-function allele of amos that disrupts regulation of the proneural gene atonal during Drosophila retinal differentiation. Chanut F, et al. Genetics, 2002 Feb. PMID 11861566, Free PMC Article
    3. Genetic and Genomic Response to Selection for Food Consumption in Drosophila melanogaster. Garlapow ME, et al. Behav Genet, 2017 Mar. PMID 27704301, Free PMC Article
    4. Brain Proteome of Drosophila melanogaster Is Enriched with Nuclear Proteins. Kuznetsova KG, et al. Biochemistry (Mosc), 2019 Jan. PMID 30927528
    5. Conditional switches for extracellular matrix patterning in Drosophila melanogaster. Khokhar A, et al. Genetics, 2008 Mar. PMID 18245854, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mRNA 3'-end processing ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chromatin ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG15160-PA
    CG15160-PB
    CG15160-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      18590891..18595429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136042.2 → NP_609886.1  uncharacterized protein Dmel_CG15160, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609886.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VJ77
      Related
      FBpp0080620
      Conserved Domains (1) summary
      smart00582
      Location:10 → 128
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

    2. NM_001299117.1 → NP_001286046.1  uncharacterized protein Dmel_CG15160, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286046.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X2JEK7
      Conserved Domains (1) summary
      smart00582
      Location:10 → 128
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

    3. NM_001299118.1 → NP_001286047.1  uncharacterized protein Dmel_CG15160, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001286047.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X2JAA3
      Conserved Domains (1) summary
      smart00582
      Location:10 → 128
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8MQN9 Q8MQN9
    Q9VJ77 Q9VJ77
    X2JAA3 X2JAA3
    X2JEK7 X2JEK7

    Gene LinkOut

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