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    CG13950 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33267, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13950provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031289
    Locus tag
    Dmel_CG13950
    See related
    AllianceGenome:FB:FBgn0031289
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13950
    Summary
    Predicted to enable carbohydrate binding activity. Is expressed in adult head. Human ortholog(s) of this gene implicated in asthma. Orthologous to several human genes including CLC (Charcot-Leyden crystal galectin); LGALS1 (galectin 1); and LGALS12 (galectin 12). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13950 in Genome Data Viewer
    Location:
    21E2-21E2; 2-1.5 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (860197..861806)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (860309..861806)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR45345 Neighboring gene mir-375 stem loop Neighboring gene arouser Neighboring gene dribble

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Galectinomics: finding themes in complexity. Cooper DN. Biochim Biophys Acta, 2002 Sep 19. PMID 12223271
    2. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
    3. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
    4. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13950-PA
    CG13950-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      860197..861806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001347748.1 → NP_001334728.1  uncharacterized protein Dmel_CG13950, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VPU6

    2. NM_134709.2 → NP_608553.1  uncharacterized protein Dmel_CG13950, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608553.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VPU6
      Related
      FBpp0077683
      Conserved Domains (1) summary
      pfam00337
      Location:4 → 145
      Gal-bind_lectin; Galactoside-binding lectin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VPU6 Q9VPU6

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