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    LOC104268967 hepatocyte nuclear factor 4-beta-like [ Apaloderma vittatum (bar-tailed trogon) ]

    Gene ID: 104268967, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC104268967
    Gene description
    hepatocyte nuclear factor 4-beta-like
    Locus tag
    N311_04001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apaloderma vittatum
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Trogoniformes; Trogonidae; Apaloderma
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    Genomic context

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    See LOC104268967 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM70340v1 (GCF_000703405.1) Unplaced Scaffold NW_009723578.1 (26296..49923, complement)

    NW_009723578.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 7 Neighboring gene cysteine rich secretory protein LCCL domain containing 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009723578.1 Unplaced Scaffold Reference ASM70340v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 4-beta-like
    Names
    Hepatocyte nuclear factor 4-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apaloderma vittatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM70340v1

    Genomic

    1. NW_009723578.1 Reference ASM70340v1

      Range
      26296..49923 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009872181.1 → XP_009870483.1  hepatocyte nuclear factor 4-beta-like isoform X1

      Conserved Domains (2) summary
      cd06931
      Location:161 → 382
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:70 → 145
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    2. XM_009872182.1 → XP_009870484.1  hepatocyte nuclear factor 4-beta-like isoform X2

      Conserved Domains (2) summary
      cd06931
      Location:150 → 371
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:59 → 134
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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