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    SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 [ Charadrius vociferus (killdeer) ]

    Gene ID: 104288515, updated on 20-Sep-2024

    Summary

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    Gene symbol
    SMARCAL1
    Gene description
    SNF2 related chromatin remodeling annealing helicase 1
    Locus tag
    N301_09592
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Charadrius vociferus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCAL1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009648925.1 (7765244..7802213)

    NW_009648925.1Genomic Context describing neighboring genes Neighboring gene X-ray repair cross complementing 5 Neighboring gene membrane associated ring-CH-type finger 4 Neighboring gene ribosomal protein L37a Neighboring gene insulin like growth factor binding protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009648925.1 Unplaced Scaffold Reference ASM70802v2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
    Names
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM70802v2

    Genomic

    1. NW_009648925.1 Reference ASM70802v2

      Range
      7765244..7802213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009887333.1 → XP_009885635.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

      Conserved Domains (4) summary
      cd00046
      Location:481 → 609
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:466 → 747
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:739 → 849
      Helicase_C; Helicase conserved C-terminal domain
      pfam07443
      Location:268 → 321
      HARP; HepA-related protein (HARP)
    Nucleotide Protein
    Heading Accession and Version

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