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    atf3 transcription factor protein [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 778544, updated on 21-Dec-2023

    Summary

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    Gene symbol
    atf3
    Gene description
    transcription factor protein
    See related
    Ensembl:ENSCING00000002838
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See atf3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190455.1 (18605..25197)

    NW_004190455.1Genomic Context describing neighboring genes Neighboring gene spectrin alpha chain, non-erythrocytic 1 Neighboring gene uncharacterized LOC113475172 Neighboring gene zonadhesin-like Neighboring gene uncharacterized LOC113475170 Neighboring gene zinc finger protein Neighboring gene uncharacterized LOC113475173 Neighboring gene endosomal/lysosomal potassium channel TMEM175-like Neighboring gene transfer RNA alanine (anticodon AGC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004190455 Unplaced Scaffold Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Imai KS, et al. Development, 2004 Aug. PMID 15269171
    2. Genomewide surveys of developmentally relevant genes in Ciona intestinalis. Satou Y, et al. Dev Genes Evol, 2003 Jun. PMID 12736827
    3. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
    4. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078190.1 → NP_001071658.1  transcription factor protein

      See identical proteins and their annotated locations for NP_001071658.1

      Status: PROVISIONAL

      Source sequence(s)
      AB210313
      UniProtKB/TrEMBL
      A0A1W2VPL4, Q4H3V9
      Related
      ENSCINP00000005786, ENSCINT00000005786
      Conserved Domains (1) summary
      cd14722
      Location:154 → 207
      bZIP_ATF3; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-3 (ATF-3) and similar proteins: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NW_004190455.1 Reference KH Primary Assembly

      Range
      18605..25197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026838953.1 → XP_026694754.1  transcription factor protein isoform X1

      UniProtKB/TrEMBL
      A0A1W3JIP0, F6WD51

    2. XM_026838952.1 → XP_026694753.1  transcription factor protein isoform X1

      UniProtKB/TrEMBL
      A0A1W3JIP0, F6WD51
      Conserved Domains (2) summary
      cd14686
      Location:154 → 198
      bZIP; coiled coil [structural motif]
      cl21462
      Location:154 → 207
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    3. XM_009863843.3 → XP_009862145.1  transcription factor protein isoform X1

      UniProtKB/TrEMBL
      A0A1W3JIP0, F6WD51
      Conserved Domains (2) summary
      cd14686
      Location:154 → 198
      bZIP; coiled coil [structural motif]
      cl21462
      Location:154 → 207
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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