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    LOC105127287 ABC transporter F family member 3 [ Populus euphratica (Euphrates poplar) ]

    Gene ID: 105127287, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC105127287
    Gene description
    ABC transporter F family member 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus euphratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC105127287 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011499871.1 (958417..964614, complement)

    NW_011499871.1Genomic Context describing neighboring genes Neighboring gene trehalase-like Neighboring gene uncharacterized LOC105127286 Neighboring gene glutamine-dependent NAD(+) synthetase-like Neighboring gene luminal-binding protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011499871.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter F family member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PopEup_1.0 Primary Assembly

    Genomic

    1. NW_011499871.1 Reference PopEup_1.0 Primary Assembly

      Range
      958417..964614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011028527.1 → XP_011026829.1  ABC transporter F family member 3

      UniProtKB/TrEMBL
      A0AAJ6XQ75
      Conserved Domains (4) summary
      cd03221
      Location:506 → 698
      ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
      PLN03073
      Location:1 → 715
      PLN03073; ABC transporter F family; Provisional
      pfam12848
      Location:409 → 492
      ABC_tran_Xtn; ABC transporter
      cl21455
      Location:204 → 369
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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