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    clc-5 Clc-like protein 5 [ Caenorhabditis elegans ]

    Gene ID: 181000, updated on 9-Dec-2024

    Summary

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    Official Symbol
    clc-5
    Official Full Name
    Clc-like protein 5
    Primary source
    WormBase:WBGene00000526
    Locus tag
    CELE_C01C10.4
    See related
    AllianceGenome:WB:WBGene00000526
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See clc-5 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Sequence:
    Chromosome: X; NC_003284.9 (7433569..7435736)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Clc-like protein 2 Neighboring gene MYM-type domain-containing protein Neighboring gene Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase acl-12 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of a new member of the gas3/PMP22 gene family in C. elegans. Agostoni E, et al. Gene, 1999 Jul 8. PMID 10395899
    2. Claudin family proteins in Caenorhabditis elegans. Simske JS, et al. Methods Mol Biol, 2011. PMID 21717355
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Clc-like protein 5
    NP_509258.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      7433569..7435736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_076857.7 → NP_509258.1  Clc-like protein 5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509258.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9NGJ7
      Conserved Domains (1) summary
      pfam07062
      Location:9 → 213
      Clc-like; Clc-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9NGJ7.1

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