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    ccnt1 cyclin T1 [ Austrofundulus limnaeus ]

    Gene ID: 106527613, updated on 13-Mar-2024

    Summary

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    Gene symbol
    ccnt1
    Gene description
    cyclin T1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Austrofundulus limnaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
    Orthologs
    human zebrafish all
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    Genomic context

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    See ccnt1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952737.1 (447076..459887, complement)

    NW_013952737.1Genomic Context describing neighboring genes Neighboring gene NCK-associated protein 5-like Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene cartilage intermediate layer protein 1-like Neighboring gene SAP domain containing ribonucleoprotein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_013952737.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin/CDK positive transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-T1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Austrofundulus_limnaeus-1.0

    Genomic

    1. NW_013952737.1 Reference Austrofundulus_limnaeus-1.0

      Range
      447076..459887 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014022544.1 → XP_013877998.1  cyclin-T1 isoform X2

      UniProtKB/TrEMBL
      A0A2I4CDD0
      Conserved Domains (2) summary
      COG5333
      Location:28 → 221
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
      cd00043
      Location:42 → 113
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

    2. XM_014022543.1 → XP_013877997.1  cyclin-T1 isoform X1

      UniProtKB/TrEMBL
      A0A2I4CDB9
      Conserved Domains (2) summary
      COG5333
      Location:28 → 224
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
      cd00043
      Location:42 → 113
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    Nucleotide Protein
    Heading Accession and Version

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