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    CMQ_985 ccch zinc finger DNA-binding protein [ Grosmannia clavigera kw1407 ]

    Gene ID: 25982124, updated on 30-Dec-2023

    Summary

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    Gene symbol
    CMQ_985
    Gene description
    ccch zinc finger DNA-binding protein
    Locus tag
    CMQ_985
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Grosmannia clavigera kw1407 (strain: kw1407, culture-collection: UAMH:11150)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomataceae; Leptographium
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    Genomic context

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    See CMQ_985 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    5

    NW_014040801.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene gamma-glutamyltranspeptidase Neighboring gene transcription initiation factor beta subunit Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_014040801.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome and transcriptome analyses of the mountain pine beetle-fungal symbiont Grosmannia clavigera, a lodgepole pine pathogen. DiGuistini S, et al. Proc Natl Acad Sci U S A, 2011 Feb 8. PMID 21262841, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ccch zinc finger DNA-binding protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_014040801.1 Reference assembly

      Range
      901106..902784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014318064.1 → XP_014173539.1  ccch zinc finger DNA-binding protein [Grosmannia clavigera kw1407]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F0XDU7
      Conserved Domains (1) summary
      COG5084
      Location:174 → 374
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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