U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    CG42784 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 326165, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG42784provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0263354
    Locus tag
    Dmel_CG42784
    See related
    AllianceGenome:FB:FBgn0263354
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:GH04046; BcDNA:HL01958; CG16850; CG16851; CG31846; CG31847; CR31846; Dmel\CG42784; Dm_2L:67149; mdcds_2231
    Old locus tag
    Dmel_CG16850; Dmel_CG31846; Dmel_CG31847; Dmel_CR31846
    Summary
    Predicted to be involved in protein ubiquitination. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in spermatozoon. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG42784 in Genome Data Viewer
    Location:
    34B11-34C3; 2-48 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (13415431..13500427)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (13415431..13500427)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Flavin adenine dinucleotide synthetase 2 Neighboring gene antisense RNA:CR45683 Neighboring gene tehao Neighboring gene long non-coding RNA:CR45684 Neighboring gene 3-hydroxyacyl-CoA dehydratase 2 Neighboring gene Heat shock protein 60D Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene B4 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Extensive identification and analysis of conserved small ORFs in animals. Mackowiak SD, et al. Genome Biol, 2015 Sep 14. PMID 26364619, Free PMC Article
    2. Genetic basis and repeatability for desiccation resistance in Drosophila melanogaster (Diptera: Drosophilidae). Fanara JJ, et al. Genetica, 2024 Feb. PMID 38102503
    3. Isolation of gene sets affected specifically by polyglutamine expression: implication of the TOR signaling pathway in neurodegeneration. Nelson B, et al. Cell Death Differ, 2005 Aug. PMID 15861189
    4. Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Lowe N, et al. Development, 2014 Oct. PMID 25294943, Free PMC Article
    5. The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster. Jehrke L, et al. Sci Rep, 2018 Apr 18. PMID 29670218, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Cul4-RING E3 ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG42784-PC
    CG42784-PD
    CG42784-PF
    CG42784-PJ

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      13415431..13500427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001201869.3 → NP_001188798.2  uncharacterized protein Dmel_CG42784, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188798.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MRJ1

    2. NM_001316392.1 → NP_001303321.1  uncharacterized protein Dmel_CG42784, isoform J [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0R4STL4

    3. NM_001259092.2 → NP_001246021.1  uncharacterized protein Dmel_CG42784, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246021.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9NDP3

    4. NM_165045.2 → NP_723822.2  uncharacterized protein Dmel_CG42784, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723822.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR64, Q9VJX4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0R4STL4 A0A0R4STL4
    M9MRJ1 M9MRJ1
    M9NDP3 M9NDP3
    Q8SZK1 Q8SZK1
    Q95S13 Q95S13
    Q9VJX4 Q9VJX4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools