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    Ap3b1 adaptor related protein complex 3 subunit beta 1 [ Heterocephalus glaber (naked mole-rat) ]

    Gene ID: 101701726, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Ap3b1
    Gene description
    adaptor related protein complex 3 subunit beta 1
    See related
    Ensembl:ENSHGLG00000001480
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Heterocephalus glaber
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See Ap3b1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624869.1 (2459370..2741529, complement)

    NW_004624869.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily C member 8 pseudogene Neighboring gene orthopedia homeobox Neighboring gene tubulin folding cofactor A Neighboring gene 40S ribosomal protein S24 Neighboring gene uncharacterized LOC110346805 Neighboring gene secretory carrier membrane protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004624869 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in anterograde synaptic vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-3 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-3 complex subunit beta-1
    Names
    adaptor related protein complex 3 beta 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HetGla_female_1.0 Primary Assembly

    Genomic

    1. NW_004624869.1 Reference HetGla_female_1.0 Primary Assembly

      Range
      2459370..2741529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021248552.1 → XP_021104211.1  AP-3 complex subunit beta-1 isoform X1

      UniProtKB/TrEMBL
      A0A0P6JJE5
      Related
      ENSHGLP00000001944.1, ENSHGLT00000001990.1
      Conserved Domains (4) summary
      sd00044
      Location:116 → 144
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:46 → 581
      Adaptin_N; Adaptin N terminal region
      pfam14796
      Location:806 → 951
      AP3B1_C; Clathrin-adaptor complex-3 beta-1 subunit C-terminal
      pfam14797
      Location:705 → 759
      SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex

    2. XM_021248553.1 → XP_021104212.1  AP-3 complex subunit beta-1 isoform X2

      Conserved Domains (4) summary
      sd00044
      Location:116 → 144
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:46 → 581
      Adaptin_N; Adaptin N terminal region
      pfam14796
      Location:806 → 852
      AP3B1_C; Clathrin-adaptor complex-3 beta-1 subunit C-terminal
      pfam14797
      Location:705 → 759
      SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex

    3. XM_021248554.1 → XP_021104213.1  AP-3 complex subunit beta-1 isoform X3

      Conserved Domains (3) summary
      sd00044
      Location:116 → 144
      HEAT; HEAT repeat [structural motif]
      pfam01602
      Location:46 → 581
      Adaptin_N; Adaptin N terminal region
      pfam14797
      Location:705 → 759
      SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex

    RNA

    1. XR_002391035.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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