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    RNA5SP172 RNA, 5S ribosomal pseudogene 172 [ Homo sapiens (human) ]

    Gene ID: 106478997, updated on 10-Dec-2024

    Summary

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    Official Symbol
    RNA5SP172provided by HGNC
    Official Full Name
    RNA, 5S ribosomal pseudogene 172provided by HGNC
    Primary source
    HGNC:HGNC:43072
    See related
    AllianceGenome:HGNC:43072
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RN5S172
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    Genomic context

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    See RNA5SP172 in Genome Data Viewer
    Location:
    4q34.3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (177457139..177457228, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (180795811..180795900, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (178378293..178378382, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377558 Neighboring gene nei like DNA glycosylase 3 Neighboring gene Sharpr-MPRA regulatory region 1660 Neighboring gene Sharpr-MPRA regulatory region 1546 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22170 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:178363543-178364086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22171 Neighboring gene AGA divergent transcript Neighboring gene aspartylglucosaminidase Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC105377559

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • RNA, 5S ribosomal 172

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_045128.1 

      Range
      101..190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      177457139..177457228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      180795811..180795900 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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