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    PART1 prostate androgen-regulated transcript 1 [ Homo sapiens (human) ]

    Gene ID: 25859, updated on 24-Sep-2024

    Summary

    Official Symbol
    PART1provided by HGNC
    Official Full Name
    prostate androgen-regulated transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:17263
    See related
    Ensembl:ENSG00000152931 MIM:604991; AllianceGenome:HGNC:17263
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NCRNA00206
    Summary
    This gene is induced by androgen in prostate adenocarcinoma cells. Multiple alternatively transcript variants have been described for this gene, none of which are predicted to encode a protein product. [provided by RefSeq, Sep 2009]
    Expression
    Biased expression in brain (RPKM 4.1), prostate (RPKM 3.9) and 5 other tissues See more
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    Genomic context

    See PART1 in Genome Data Viewer
    Location:
    5q12.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (60487713..60547657)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (61306025..61365980)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (59783540..59843484)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 4D Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22586 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22587 Neighboring gene Sharpr-MPRA regulatory region 9229 Neighboring gene ribosomal protein L31 pseudogene 8 Neighboring gene SET pseudogene 21 Neighboring gene Sharpr-MPRA regulatory region 1909 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16038 Neighboring gene uncharacterized LOC124900982 Neighboring gene DEP domain containing 1B Neighboring gene calcium binding protein 39 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • prostate androgen-regulated transcript 1 (non-protein coding)
    • prostate-specific and androgen-regulated cDNA 14D7 protein

    Clone Names

    • DKFZp586D0823

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024617.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) contains different segments for its 3' end, compared to variant 3.
      Source sequence(s)
      AK094518, AK312071, BC069304
    2. NR_028508.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains a different segment for its 3' end, compared to variant 3.
      Source sequence(s)
      AF163475, BQ898163
      Related
      ENST00000515734.2
    3. NR_028509.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript.
      Source sequence(s)
      AC016591, AF070547, AF163475
      Related
      ENST00000661844.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      60487713..60547657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      61306025..61365980
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039499.1: Suppressed sequence

      Description
      NM_001039499.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    2. NM_001040639.1: Suppressed sequence

      Description
      NM_001040639.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.