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    LOC131054360 imidazoleglycerol-phosphate dehydratase 1, chloroplastic [ Cryptomeria japonica (Japanese cedar) ]

    Gene ID: 131054360, updated on 19-Jun-2024

    Summary

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    Gene symbol
    LOC131054360
    Gene description
    imidazoleglycerol-phosphate dehydratase 1, chloroplastic
    Locus tag
    SUGI_0311770
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cryptomeria japonica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Pinopsida; Pinidae; Conifers II; Cupressales; Cupressaceae; Cryptomeria
    Also known as
    IGPD
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    Genomic context

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    See LOC131054360 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_08 current Sugi_1.0 (GCF_030272615.1) 3 NC_081407.1 (811157818..811247520)
    RS_2023_06 previous assembly CJA_r1.0 (GCF_027924625.1) Unplaced Scaffold NW_026650503.1 (2413380..2499198, complement)

    Chromosome 3 - NC_081407.1Genomic Context describing neighboring genes Neighboring gene MLO-like protein 12 Neighboring gene uncharacterized LOC131874382 Neighboring gene uncharacterized LOC131874682 Neighboring gene protein RBL Neighboring gene FRIGIDA-like protein 4a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Li FW, et al. Proc Natl Acad Sci U S A, 2014 May 6. PMID 24733898, Free PMC Article
    2. The evolutionary history of ferns inferred from 25 low-copy nuclear genes. Rothfels CJ, et al. Am J Bot, 2015 Jul. PMID 26199366
    3. Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don). Mishima K, et al. BMC Genomics, 2018 Apr 23. PMID 29685102, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables imidazoleglycerol-phosphate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-histidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    imidazoleglycerol-phosphate dehydratase 1, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030272615.1-RS_2023_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sugi_1.0 Primary Assembly

    Genomic

    1. NC_081407.1 Reference Sugi_1.0 Primary Assembly

      Range
      811157818..811247520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_057988858.2 → XP_057844841.2  imidazoleglycerol-phosphate dehydratase 1, chloroplastic

    Nucleotide Protein
    Heading Accession and Version

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