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    LOC7475677 protein TIFY 10b [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7475677, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC7475677
    Gene description
    protein TIFY 10b
    Locus tag
    POPTR_003G068900v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC7475677 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 3 NC_037287.2 (9604237..9605931)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 3 NC_037287.1 (9718305..9720002)

    Chromosome 3 - NC_037287.2Genomic Context describing neighboring genes Neighboring gene exocyst complex component EXO70A1 Neighboring gene pollen receptor-like kinase 3 Neighboring gene oligouridylate-binding protein 1B Neighboring gene protein PHYTOCHROME-DEPENDENT LATE-FLOWERING

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes. Plett JM, et al. Proc Natl Acad Sci U S A, 2014 Jun 3. PMID 24847068, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. We conclude that Laccaria bicolor, in contrast to arbuscular mycorrhizal fungi and biotrophic pathogens, promotes mutualism by blocking JA action through the interaction of MiSSP7 with PtJAZ6. [JAZ6]
      Title: Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to wounding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TIFY 10b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037287.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      9604237..9605931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002304082.4 → XP_002304118.3  protein TIFY 10b

      UniProtKB/TrEMBL
      A0A2K2B2R7
    Nucleotide Protein
    Heading Accession and Version

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