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    Mgat1 mannoside acetylglucosaminyltransferase 1 [ Mus musculus (house mouse) ]

    Gene ID: 17308, updated on 27-Nov-2024

    Summary

    Official Symbol
    Mgat1provided by MGI
    Official Full Name
    mannoside acetylglucosaminyltransferase 1provided by MGI
    Primary source
    MGI:MGI:96973
    See related
    Ensembl:ENSMUSG00000020346 AllianceGenome:MGI:96973
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mgat-1
    Summary
    Enables acetylglucosaminyltransferase activity. Acts upstream of or within UDP-N-acetylglucosamine catabolic process and in utero embryonic development. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including decidua; early conceptus; embryo ectoderm; embryo endoderm; and retina outer nuclear layer. Orthologous to human MGAT1 (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in thymus adult (RPKM 29.2), spleen adult (RPKM 26.9) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Mgat1 in Genome Data Viewer
    Location:
    11 B1.2; 11 29.27 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (49135018..49153854)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (49244191..49263027)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 62 Neighboring gene predicted gene, 18583 Neighboring gene STARR-positive B cell enhancer ABC_E6976 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:49057557-49057744 Neighboring gene predicted gene, 51893 Neighboring gene STARR-positive B cell enhancer ABC_E195 Neighboring gene STARR-positive B cell enhancer ABC_E8994 Neighboring gene olfactory receptor family 2 subfamily Y member 1G Neighboring gene STARR-seq mESC enhancer starr_29373 Neighboring gene olfactory receptor family 2 subfamily Y member 1F

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (5)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in Golgi membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
    Names
    GNT-I
    N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I
    glcNAc-T I
    NP_001103618.1
    NP_001103619.1
    NP_001103620.1
    NP_034924.3
    XP_006532461.1
    XP_006532462.1
    XP_006532463.1
    XP_017169803.1
    XP_030101489.1
    XP_030101490.1
    XP_036012268.1
    XP_036012269.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110148.1NP_001103618.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

      See identical proteins and their annotated locations for NP_001103618.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AI118268, AK040121, AL606829, BY088342
      Consensus CDS
      CCDS24602.1
      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Related
      ENSMUSP00000126303.2, ENSMUST00000167400.8
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    2. NM_001110149.1NP_001103619.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

      See identical proteins and their annotated locations for NP_001103619.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All variants encode the same isoform.
      Source sequence(s)
      AI118268, AK040121
      Consensus CDS
      CCDS24602.1
      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Related
      ENSMUSP00000104817.2, ENSMUST00000109194.2
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    3. NM_001110150.1NP_001103620.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

      See identical proteins and their annotated locations for NP_001103620.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. All variants encode the same isoform.
      Source sequence(s)
      AI118268, AK004760
      Consensus CDS
      CCDS24602.1
      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Related
      ENSMUSP00000098851.5, ENSMUST00000101293.11
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    4. NM_010794.3NP_034924.3  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

      See identical proteins and their annotated locations for NP_034924.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All variants encode the same isoform.
      Source sequence(s)
      AI118268, AK040121, AL606829, BY088342
      Consensus CDS
      CCDS24602.1
      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Related
      ENSMUSP00000080484.7, ENSMUST00000081794.7
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      49135018..49153854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314314.1XP_017169803.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    2. XM_030245629.1XP_030101489.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    3. XM_036156375.1XP_036012268.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    4. XM_006532398.5XP_006532461.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

      See identical proteins and their annotated locations for XP_006532461.1

      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    5. XM_030245630.2XP_030101490.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    6. XM_006532400.5XP_006532463.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

      See identical proteins and their annotated locations for XP_006532463.1

      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    7. XM_036156376.1XP_036012269.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    8. XM_006532399.3XP_006532462.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

      See identical proteins and their annotated locations for XP_006532462.1

      UniProtKB/Swiss-Prot
      P27808
      UniProtKB/TrEMBL
      Q544F0, Q8CIC9
      Conserved Domains (1) summary
      cl11394
      Location:12446
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold