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    LOC100527107 uncharacterized LOC100527107 [ Glycine max (soybean) ]

    Gene ID: 100527107, updated on 30-Mar-2023

    Summary

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    Gene symbol
    LOC100527107
    Gene description
    uncharacterized LOC100527107
    Locus tag
    GLYMA_18G286900v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100527107 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (56976927..56978119)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (56704813..56706060)

    Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene aquaporin TIP1-2 Neighboring gene F-box protein At2g39490 Neighboring gene disease resistance protein RPP13 Neighboring gene NBS-LRR disease-resistance protein scn3r1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100527107

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001248073.2 → NP_001235002.1  uncharacterized protein LOC100527107 isoform 1

      See identical proteins and their annotated locations for NP_001235002.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is intronless. It encodes the long protein.
      Source sequence(s)
      BE021665, BI785065, BI971179, EV276423
      UniProtKB/TrEMBL
      C6T3B3
      Conserved Domains (1) summary
      cl36576
      Location:6 → 31
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins

    2. NM_001401035.1 → NP_001387964.1  uncharacterized protein LOC100527107 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an intron. It encodes the short protein.
      Source sequence(s)
      BI971179, BU765586
      UniProtKB/TrEMBL
      K7MVB5

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      56976927..56978119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006601712.4 → XP_006601775.1  uncharacterized protein LOC100527107 isoform X1

      UniProtKB/TrEMBL
      K7MVB5
      Conserved Domains (1) summary
      cl36576
      Location:6 → 31
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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